Index

_

__add__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __call__() (mechanica.MxClusterParticleHandle method), [1] (mechanica.MxParticleType method), [1] (mechanica.MxPotential method), [1] __eq__() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] __getattr__() (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] __getitem__() (mechanica.MxAngleHandle method), [1] (mechanica.MxBondHandle method), [1] (mechanica.MxDihedralHandle method), [1] (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __iadd__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __imul__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __isub__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __itruediv__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __len__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1]

__mul__() (mechanica.MxMatrix3d method), [1], [2], [3] (mechanica.MxMatrix3f method), [1], [2], [3] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __ne__() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] __neg__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] __reduce__() (mechanica.DPDPotential method), [1] (mechanica.MxAngle method), [1] (mechanica.MxBond method), [1] (mechanica.MxBoundaryConditions method), [1] (mechanica.MxDihedral method), [1] (mechanica.MxForce method), [1] (mechanica.MxParticle method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleType method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxPotential method), [1] (mechanica.MxSpecies method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxStyle method), [1] __setattr__() (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] __setitem__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __str__() (mechanica.MxAngleHandle method), [1] (mechanica.MxBondHandle method), [1] (mechanica.MxDihedralHandle method), [1] (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxSpecies method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __sub__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] __truediv__() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] _call() (mechanica.MxClusterParticleHandle method), [1] (mechanica.MxParticleType method), [1] (mechanica.MxPotential method), [1] _CellPolarity (class in mechanica.models.center.cell_polarity), [1] _in() (mechanica.Mx3DFEdgeData method), [1] (mechanica.Mx3DFFaceData method), [1] (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFVertexData method), [1]

A

a() (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] active (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] add() (mechanica.Mx3DFStructure method), [1] age (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] (mechanica.MxParticleHandle property), [1] all() (mechanica.MxParticleList static method), [1] (mechanica.MxParticleTypeList static method), [1] alpha (mechanica.DPDPotential attribute), [1] Angle (in module mechanica), [1] angle (mechanica.SubRendererFlags attribute), [1] angle() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] AngleHandle (in module mechanica), [1]

angles (mechanica.MxParticleHandle property), [1] angles() (mechanica.MxUniverse static method), [1] arrow (mechanica.SubRendererFlags attribute), [1] as_list() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] as_lists() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] axis() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1]

B

b() (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] back (mechanica.MxBoundaryConditions attribute), [1] backward() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] bcc() (in module mechanica.lattice), [1] become() (mechanica.MxParticleHandle method), [1] bendingCoeff (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] Berendsen (class in mechanica), [1] berendsen_tstat() (mechanica.MxForce static method), [1] bind (in module mechanica), [1] bind_species() (mechanica.MxForce method), [1] Bond (in module mechanica), [1]

bond (mechanica.SubRendererFlags attribute), [1] BondHandle (in module mechanica), [1] BondRule (class in mechanica.lattice), [1] bonds (mechanica.MxParticleHandle property), [1] bonds() (mechanica.MxBind static method), [1] (mechanica.MxUniverse static method), [1] bottom (mechanica.MxBoundaryConditions attribute), [1] bound (mechanica.MxPotential property), [1] boundary_condition (mechanica.MxSpecies property), [1] (mechanica.MxSpeciesValue property), [1] boundary_conditions (mechanica.MxUniverse property), [1] BOUNDARY_NONE (in module mechanica), [1] BoundaryCondition (in module mechanica), [1] boundaryCondition() (mechanica.MxBind static method), [1] BoundaryConditions (in module mechanica), [1] boundaryConditions() (mechanica.MxBind static method), [1] build_date (mechanica.version attribute)

C

cameraCenter() (mechanica.MxSystem static method), [1] cameraMoveTo() (mechanica.MxSystem static method), [1] cameraReset() (mechanica.MxSystem static method), [1] cameraRollLeft() (mechanica.MxSystem static method), [1] cameraRollRight() (mechanica.MxSystem static method), [1] cameraRotateDown() (mechanica.MxSystem static method), [1] cameraRotateLeft() (mechanica.MxSystem static method), [1] cameraRotateRight() (mechanica.MxSystem static method), [1] cameraRotateToAxis() (mechanica.MxSystem static method), [1] cameraRotateToEulerAngle() (mechanica.MxSystem static method), [1] cameraRotateUp() (mechanica.MxSystem static method), [1] cameraRotation() (mechanica.MxSystem static method), [1] cameraTranslateBackward() (mechanica.MxSystem static method), [1] cameraTranslateDown() (mechanica.MxSystem static method), [1] cameraTranslateForward() (mechanica.MxSystem static method), [1] cameraTranslateLeft() (mechanica.MxSystem static method), [1] cameraTranslateRight() (mechanica.MxSystem static method), [1] cameraTranslateUp() (mechanica.MxSystem static method), [1] cameraViewBack() (mechanica.MxSystem static method), [1] cameraViewBottom() (mechanica.MxSystem static method), [1] cameraViewFront() (mechanica.MxSystem static method), [1] cameraViewLeft() (mechanica.MxSystem static method), [1] cameraViewRight() (mechanica.MxSystem static method), [1] cameraViewTop() (mechanica.MxSystem static method), [1] cameraZoom() (mechanica.MxSystem static method), [1] cameraZoomBy() (mechanica.MxSystem static method), [1] cameraZoomIn() (mechanica.MxSystem static method), [1] cameraZoomOut() (mechanica.MxSystem static method), [1] cameraZoomTo() (mechanica.MxSystem static method), [1] CellPolarity (in module mechanica.models.center.cell_polarity), [1] center (mechanica.MxUniverse property), [1] center_of_mass (mechanica.MxClusterParticleHandle property), [1] (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] centroid (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.MxClusterParticleHandle property), [1] (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] charge (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.MxSpecies property), [1] (mechanica.ParticleType attribute), [1]

clear() (mechanica.Mx3DFStructure method), [1] ClipPlane (in module mechanica), [1] ClipPlanes (in module mechanica), [1] close() (in module mechanica) (mechanica.MxSimulator static method), [1] Cluster (in module mechanica), [1] cluster() (mechanica.MxClusterParticleHandle method), [1] cluster_id (mechanica.MxParticleHandle property), [1] ClusterHandle (in module mechanica), [1] ClusterType (class in mechanica), [1] coef (mechanica.Friction attribute), [1] color (mechanica.Mx3DFRenderData property), [1] color3_names() (in module mechanica), [1] colormap (mechanica.MxStyle property), [1] ColorMapper (in module mechanica), [1] compartment (mechanica.MxSpecies property), [1] compile_flags() (mechanica.MxSystem static method), [1] compiler (mechanica.version attribute) compiler_version (mechanica.version attribute) conjugated() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] constant (mechanica.MxSpecies property), [1] (mechanica.MxSpeciesValue property), [1] ConstantForce (in module mechanica), [1] conversion_factor (mechanica.MxSpecies property), [1] cosine_dihedral() (mechanica.MxPotential static method), [1] coulomb() (mechanica.MxPotential static method), [1] coulombR() (mechanica.MxPotential static method), [1] couplingFlat (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] couplingLateral (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] couplingOrtho (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] cpu_info() (mechanica.MxSystem static method), [1] create() (mechanica.MxAngle static method), [1] (mechanica.MxBond static method), [1] (mechanica.MxClipPlanes static method), [1] (mechanica.MxDihedral static method), [1] create_lattice() (in module mechanica.lattice), [1] cType (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] Cube (mechanica.PointsType attribute), [1] custom (mechanica.MxPotentialPy attribute), [1] cutoff (mechanica.MxPotential property), [1] (mechanica.MxUniverse property), [1]

D

data() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] decays() (mechanica.MxAngleHandle method), [1] (mechanica.MxBondHandle method), [1] (mechanica.MxDihedralHandle method), [1] decorated() (mechanica.MxSystem static method), [1] decorateScene() (mechanica.MxSystem static method), [1] destroy() (mechanica.MxAngleHandle method), [1] (mechanica.MxBondHandle method), [1] (mechanica.MxClipPlane method), [1] (mechanica.MxDihedralHandle method), [1] (mechanica.MxParticleHandle method), [1] dev (mechanica.version attribute) diagonal() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] Dihedral (in module mechanica), [1] dihedral (mechanica.SubRendererFlags attribute), [1] DihedralHandle (in module mechanica), [1] dihedrals (mechanica.MxParticleHandle property), [1] dihedrals() (mechanica.MxUniverse static method), [1] dim() (mechanica.MxUniverse static method), [1] disableConsoleLogging() (mechanica.MxLogger static method), [1] disableFileLogging() (mechanica.MxLogger static method), [1] disableLogging() (mechanica.MxLogger static method), [1] Disk (mechanica.PointsType attribute), [1] dissociation_energy (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1]

distance() (mechanica.MxParticleHandle method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] distanceCoeff (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] distanceScaled() (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] domain (mechanica.MxPotential property), [1] dot() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] dpd (in module mechanica.MxPotential.Kind), [1] dpd() (mechanica.MxPotential static method), [1] DPDPotential (class in mechanica), [1] dt (mechanica.MxUniverse property), [1] durration_steps (mechanica.Gaussian attribute), [1] dynamics (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1]

E

Edge3DFData (in module mechanica), [1] edges (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] egl_info() (mechanica.MxSystem static method), [1] enableConsoleLogging() (mechanica.MxLogger static method), [1] enableFileLogging() (mechanica.MxLogger static method), [1] end_time (mechanica.MxParticleTimeEvent attribute), [1] (mechanica.MxTimeEventPy attribute), [1]

energy (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] eps (mechanica.ParticleType attribute), [1] Event (in module mechanica), [1] ewald() (mechanica.MxPotential static method), [1] extend() (mechanica.Mx3DFStructure method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1]

F

f1 (mechanica.MxForceSum attribute), [1] f2 (mechanica.MxForceSum attribute), [1] Face3DFData (in module mechanica), [1] faces (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] factory() (mechanica.MxParticleType method), [1] fcc() (in module mechanica.lattice), [1] filled_cube_random() (in module mechanica), [1] filled_cube_uniform() (in module mechanica), [1] flipped() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] flippedCols() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] flippedRows() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] flush() (mechanica.Mx3DFStructure method), [1] flux() (mechanica.MxFluxes static method), [1] Fluxes (in module mechanica), [1] fluxFick() (mechanica.MxFluxes static method), [1] Force (in module mechanica), [1] force (mechanica.MxParticleHandle property), [1] force() (mechanica.MxBind static method), [1] force_init (mechanica.MxParticleHandle property), [1] forcePersistent() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] forces (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] ForceSum (in module mechanica), [1] FORWARD_EULER (in module mechanica), [1]

FREESLIP_FULL (in module mechanica), [1] FREESLIP_X (in module mechanica), [1] FREESLIP_Y (in module mechanica), [1] FREESLIP_Z (in module mechanica), [1] Friction (class in mechanica), [1] friction() (mechanica.MxForce static method), [1] fromFile() (mechanica.Mx3DFStructure method), [1] fromFile3DF() (mechanica.MxIO static method), [1] fromForce() (mechanica.Berendsen static method), [1] (mechanica.Friction static method), [1] (mechanica.Gaussian static method), [1] (mechanica.MxConstantForce static method), [1] (mechanica.MxConstantForcePy static method), [1] (mechanica.MxForceSum static method), [1] fromMatrix() (mechanica.MxQuaterniond static method), [1] (mechanica.MxQuaternionf static method), [1] fromPot() (mechanica.DPDPotential static method), [1] fromString() (mechanica.DPDPotential static method), [1] (mechanica.MxAngle static method), [1] (mechanica.MxBond static method), [1] (mechanica.MxBoundaryConditions static method), [1] (mechanica.MxDihedral static method), [1] (mechanica.MxForce static method), [1] (mechanica.MxParticle static method), [1] (mechanica.MxParticleList static method), [1] (mechanica.MxParticleType static method), [1] (mechanica.MxParticleTypeList static method), [1] (mechanica.MxPotential static method), [1] (mechanica.MxSpecies static method), [1] (mechanica.MxSpeciesList static method), [1] (mechanica.MxStateVector static method), [1] (mechanica.MxStyle static method), [1] front (mechanica.MxBoundaryConditions attribute), [1] frozen (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType property), [1] (mechanica.ParticleType attribute), [1] frozen_x (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType property), [1] frozen_y (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType property), [1] frozen_z (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType property), [1]

G

g() (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] gamma (mechanica.DPDPotential attribute), [1] Gaussian (class in mechanica), [1] get() (mechanica.MxAngleHandle method), [1] (mechanica.MxBondHandle method), [1] (mechanica.MxClusterParticleType method), [1] (mechanica.MxDihedralHandle method), [1] (mechanica.MxParticleType method), [1] (mechanica.MxSimulator static method), [1] (mechanica.ParticleType class method), [1] get_seed() (in module mechanica), [1] getAmbientColor() (mechanica.MxSystem static method), [1] getBondedNeighbors() (mechanica.MxParticleHandle method), [1] getClipPlaneEquation() (mechanica.MxClipPlanes static method), [1] getCUDAConfig() (mechanica.MxSimulator static method), [1]

getCurrentLevelAsString() (mechanica.MxLogger static method), [1] getDiffuseColor() (mechanica.MxSystem static method), [1] getDiscretizationColor() (mechanica.MxSystem static method), [1] getEquation() (mechanica.MxClipPlane method), [1] getFileName() (mechanica.MxLogger static method), [1] getGridColor() (mechanica.MxSystem static method), [1] getInitMode() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] getInitPolarAB() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] getInitPolarPCP() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] getLevel() (mechanica.MxLogger static method), [1] getLightColor() (mechanica.MxSystem static method), [1] getLightDirection() (mechanica.MxSystem static method), [1] getSceneBoxColor() (mechanica.MxSystem static method), [1] getShininess() (mechanica.MxSystem static method), [1] getSpecularColor() (mechanica.MxSystem static method), [1] getVectorAB() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] getVectorPCP() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] gl_info() (mechanica.MxSystem static method), [1] glj() (mechanica.MxPotential static method), [1] grid() (mechanica.MxUniverse static method), [1]

H

half_life (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] harmonic() (mechanica.MxPotential static method), [1] harmonic_angle() (mechanica.MxPotential static method), [1] harmonic_dihedral() (mechanica.MxPotential static method), [1] has() (mechanica.Mx3DFEdgeData method), [1] (mechanica.Mx3DFFaceData method), [1] (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1]

has_cuda (in module mechanica) has_only_substance_units (mechanica.MxSpecies property), [1] hasType() (mechanica.MxClusterParticleType method), [1] hcp() (in module mechanica.lattice), [1] hex2d() (in module mechanica.lattice), [1]

I

icosphere() (in module mechanica), [1] id (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFVertexData property), [1] (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.MxSpecies property), [1] index (mechanica.MxClipPlane property), [1] init() (in module mechanica) initial_amount (mechanica.MxSpecies property), [1] (mechanica.MxSpeciesValue property), [1] initial_concentration (mechanica.MxSpecies property), [1] (mechanica.MxSpeciesValue property), [1] insert() (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxSpeciesList method), [1] intervals (mechanica.MxPotential property), [1] inverted() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] invertedNormalized() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] invertedOrthogonal() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1]

invertedRigid() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] io (in module mechanica), [1] irun() (in module mechanica) (mechanica.MxSimulatorPy static method), [1] is_in() (mechanica.Mx3DFEdgeData method), [1] (mechanica.Mx3DFFaceData method), [1] (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFVertexData method), [1] is_jupyter_notebook() (mechanica.MxSystemPy static method), [1] is_terminal_interactive() (mechanica.MxSystemPy static method), [1] isCluster() (mechanica.MxParticleType method), [1] isNormalized() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] isRegistered() (mechanica.MxParticleType method), [1] isRigidTransformation() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] itau (mechanica.Berendsen attribute), [1] item() (mechanica.MxClipPlanes static method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxSpeciesList method), [1] items (mechanica.MxClusterParticleHandle attribute), [1] items() (mechanica.MxAngleHandle static method), [1] (mechanica.MxBondHandle static method), [1] (mechanica.MxDihedralHandle static method), [1] (mechanica.MxParticleType method), [1]

K

key_alt (mechanica.MxKeyEvent property), [1] key_ctrl (mechanica.MxKeyEvent property), [1] key_name (mechanica.MxKeyEvent property), [1] key_shift (mechanica.MxKeyEvent property), [1]

KeyEvent (in module mechanica), [1] kind_str (mechanica.MxBoundaryCondition property), [1] kinetic_energy (mechanica.MxParticleType attribute), [1] (mechanica.MxUniverse property), [1]

L

last_fired (mechanica.MxEventBase attribute), [1] left (mechanica.MxBoundaryConditions attribute), [1] len() (mechanica.MxClipPlanes static method), [1] length() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1]

lennard_jones_12_6() (mechanica.MxPotential static method), [1] lennard_jones_12_6_coulomb() (mechanica.MxPotential static method), [1] levelToString() (mechanica.MxLogger static method), [1] linear() (mechanica.MxPotential static method), [1] load() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] log() (mechanica.MxLogger static method), [1] Logger (in module mechanica), [1] lookAt() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1]

M

mag (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] major (mechanica.version attribute) mapImportParticleId() (mechanica.MxIO static method), [1] mapImportParticleTypeId() (mechanica.MxIO static method), [1] mapper (mechanica.MxStyle property), [1] mass (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1] max (mechanica.MxPotential property), [1] max_val (mechanica.MxColorMapper property), [1] mean (mechanica.Gaussian attribute), [1] mechanica module mechanica.models module mechanica.models.center.cell_polarity module, [1] Mesh3DFData (in module mechanica), [1] meshes (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] min (mechanica.MxPotential property), [1] min_val (mechanica.MxColorMapper property), [1] minimum_radius (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1] minor (mechanica.version attribute) module mechanica mechanica.models mechanica.models.center.cell_polarity, [1] moment_of_inertia (mechanica.MxClusterParticleHandle property), [1] (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] morse() (mechanica.MxPotential static method), [1] Mx3DFEdgeData (class in mechanica), [1] Mx3DFFaceData (class in mechanica), [1] Mx3DFMeshData (class in mechanica), [1] Mx3DFRenderData (class in mechanica), [1] Mx3DFStructure (class in mechanica), [1] Mx3DFVertexData (class in mechanica), [1] MxAngle (class in mechanica), [1] MxAngleHandle (class in mechanica), [1] MxBind (class in mechanica), [1] MxBond (class in mechanica), [1] MxBondHandle (class in mechanica), [1] MxBoundaryCondition (class in mechanica), [1] MxBoundaryConditions (class in mechanica), [1] MxCellPolarityPotentialContact (class in mechanica.models.center.cell_polarity), [1] MxClipPlane (class in mechanica), [1] MxClipPlanes (class in mechanica), [1] MxCluster (class in mechanica), [1]

MxClusterParticleHandle (class in mechanica), [1] MxClusterParticleType (class in mechanica), [1] MxColorMapper (class in mechanica), [1] MxConstantForce (class in mechanica), [1] MxConstantForcePy (class in mechanica), [1] MxDihedral (class in mechanica), [1] MxDihedralHandle (class in mechanica), [1] MxEvent (class in mechanica), [1] MxEventBase (class in mechanica), [1] MxEventPy (class in mechanica), [1] MxFluxes (class in mechanica), [1] MxForce (class in mechanica), [1] MxForceSum (class in mechanica), [1] MxIO (class in mechanica), [1] MxKeyEvent (class in mechanica), [1] MxLogger (class in mechanica), [1] MxMatrix3d (class in mechanica), [1] MxMatrix3f (class in mechanica), [1] MxMatrix4d (class in mechanica), [1] MxMatrix4f (class in mechanica), [1] MxParticle (class in mechanica), [1] MxParticleEvent (class in mechanica), [1] MxParticleEventPy (class in mechanica), [1] MxParticleHandle (class in mechanica), [1] MxParticleList (class in mechanica), [1] MxParticleTimeEvent (class in mechanica), [1] MxParticleTimeEventPy (class in mechanica), [1] MxParticleType (class in mechanica), [1] MxParticleTypeList (class in mechanica), [1] MxPotential (class in mechanica), [1] MxPotentialPy (class in mechanica), [1] MxQuaterniond (class in mechanica), [1] MxQuaternionf (class in mechanica), [1] MxSimulator (class in mechanica), [1] MxSimulatorPy (class in mechanica), [1] MxSpecies (class in mechanica), [1] MxSpeciesList (class in mechanica), [1] MxSpeciesValue (class in mechanica), [1] MxStateVector (class in mechanica), [1] MxStyle (class in mechanica), [1] MxSystem (class in mechanica), [1] MxSystemPy (class in mechanica), [1] MxTimeEventPy (class in mechanica), [1] MxUniverse (class in mechanica), [1] MxVector2d (class in mechanica), [1] MxVector2f (class in mechanica), [1] MxVector2i (class in mechanica), [1] MxVector3d (class in mechanica), [1] MxVector3f (class in mechanica), [1] MxVector3i (class in mechanica), [1] MxVector4d (class in mechanica), [1] MxVector4f (class in mechanica), [1] MxVector4i (class in mechanica), [1]

N

name (mechanica.Mx3DFMeshData property), [1] (mechanica.MxBoundaryCondition attribute), [1] (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.MxSpecies property), [1] (mechanica.MxUniverse property), [1] (mechanica.ParticleType attribute), [1] name2 (mechanica.ParticleType attribute), [1] names (mechanica.MxColorMapper property), [1] neighbors() (mechanica.MxParticleHandle method), [1] newColorMapper() (mechanica.MxStyle method), [1] Newtonian (in module mechanica), [1] newType() (mechanica.MxParticleType method), [1] next_time (mechanica.MxParticleTimeEvent attribute), [1] (mechanica.MxTimeEventPy attribute), [1] normal (mechanica.Mx3DFFaceData property), [1] (mechanica.MxBoundaryCondition attribute), [1] (mechanica.MxClipPlane property), [1] normalized() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1]

normalMatrix() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] num_edges (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] num_faces (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] num_meshes (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFStructure property), [1] (mechanica.Mx3DFVertexData property), [1] num_types (mechanica.MxUniverse property), [1] num_vertices (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1]

O

on_event() (in module mechanica), [1] on_keypress() (in module mechanica), [1] on_particle() (in module mechanica), [1] on_particletime() (in module mechanica), [1] on_register() (mechanica.MxParticleType method), [1]

on_time() (in module mechanica), [1] origin() (mechanica.MxUniverse static method), [1] orthographicProjection() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] Overdamped (in module mechanica), [1] overlapping_sphere() (mechanica.MxPotential static method), [1]

P

pairwise() (mechanica.MxBondHandle static method), [1] part() (mechanica.MxParticleHandle method), [1] Particle (in module mechanica), [1] particle() (mechanica.MxParticleType method), [1] ParticleEvent (in module mechanica), [1] ParticleHandle (in module mechanica), [1] ParticleList (in module mechanica), [1] particles() (mechanica.MxBind static method), [1] (mechanica.MxUniverse static method), [1] ParticleTimeEvent (in module mechanica), [1] ParticleType (class in mechanica), [1] particleTypeIds() (mechanica.MxParticleType static method), [1] ParticleTypeList (in module mechanica), [1] parts (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] (mechanica.MxParticleType attribute), [1] patch (mechanica.version attribute) period (mechanica.MxParticleTimeEvent attribute), [1] (mechanica.MxTimeEventPy attribute), [1] periodic (mechanica.MxPotential property), [1] PERIODIC_FULL (in module mechanica), [1] PERIODIC_X (in module mechanica), [1] PERIODIC_Y (in module mechanica), [1] PERIODIC_Z (in module mechanica), [1] perspectiveProjection() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] planeEquation() (mechanica.MxVector4d class method), [1] (mechanica.MxVector4f class method), [1] plot() (mechanica.MxPotential method), [1]

point (mechanica.MxClipPlane property), [1] points() (in module mechanica), [1] PointsType (class in mechanica), [1] PolarityForcePersistent (class in mechanica.models.center.cell_polarity), [1] position (mechanica.Mx3DFVertexData property), [1] (mechanica.MxParticleHandle property), [1] positions (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] Potential (in module mechanica), [1] potential (in module mechanica.MxPotential.Kind), [1] (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] potential_energy (mechanica.MxParticleType attribute), [1] potentialContact() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] power() (mechanica.MxPotential static method), [1] primes() (in module mechanica), [1] projected() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] projectedOntoNormalized() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] py_particle() (mechanica.MxParticle method), [1]

R

r() (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] r0 (mechanica.MxPotential property), [1] r_square (mechanica.MxPotential property), [1] radius (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1] radius_of_gyration (mechanica.MxClusterParticleHandle property), [1] (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] random() (mechanica.MxForce static method), [1] random_point() (in module mechanica), [1] random_points() (in module mechanica), [1] random_unit_vector() (in module mechanica), [1] random_vector() (in module mechanica), [1] rate (mechanica.models.center.cell_polarity.MxCellPolarityPotentialContact attribute), [1] reflection() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] registerParticle() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] registerType() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] (mechanica.MxParticleType method), [1] remove() (mechanica.Mx3DFStructure method), [1] (mechanica.MxEventBase method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] renderData (mechanica.Mx3DFMeshData property), [1] reserve() (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] resized() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1]

restore (mechanica.MxBoundaryCondition attribute), [1] rgb() (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] right (mechanica.MxBoundaryConditions attribute), [1] right() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] Ring (mechanica.PointsType attribute), [1] rmin (mechanica.ParticleType attribute), [1] rotate() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] rotateAt() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] rotation() (mechanica.MxMatrix3d static method), [1] (mechanica.MxMatrix3f static method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond static method), [1] (mechanica.MxQuaternionf static method), [1] rotationNormalized() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] rotationScaling() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] rotationShear() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] rotationX() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] rotationY() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] rotationZ() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] row() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] run() (in module mechanica) (mechanica.MxSimulator static method), [1] RUNGE_KUTTA_4 (in module mechanica), [1]

S

sc() (in module mechanica.lattice), [1] scalar() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] scale() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] scaleFrom() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] scaling() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] scalingSquared() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] screenshot() (mechanica.MxSystem static method), [1] secrete() (mechanica.MxFluxes static method), [1] (mechanica.MxSpeciesValue method), [1] sensAB (mechanica.models.center.cell_polarity.PolarityForcePersistent attribute), [1] sensPCP (mechanica.models.center.cell_polarity.PolarityForcePersistent attribute), [1] set_colormap() (mechanica.MxColorMapper method), [1] set_seed() (in module mechanica), [1] setAmbientColor() (mechanica.MxSystem static method), [1] setArrowColors() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setArrowLength() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setArrowScale() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setClipPlaneEquation() (mechanica.MxClipPlanes static method), [1] setColor() (mechanica.MxStyle method), [1] setDiffuseColor() (mechanica.MxSystem static method), [1] setDiscretizationColor() (mechanica.MxSystem static method), [1] setDrawVectors() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setEquation() (mechanica.MxClipPlane method), [1] setGridColor() (mechanica.MxSystem static method), [1] setInitMode() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setInitPolarAB() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setInitPolarPCP() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setLevel() (mechanica.MxLogger static method), [1] setLightColor() (mechanica.MxSystem static method), [1] setLightDirection() (mechanica.MxSystem static method), [1] setSceneBoxColor() (mechanica.MxSystem static method), [1] setShininess() (mechanica.MxSystem static method), [1] setSpecularColor() (mechanica.MxSystem static method), [1] setVectorAB() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] setVectorPCP() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] shearingX() (mechanica.MxMatrix3d static method), [1] (mechanica.MxMatrix3f static method), [1] shearingXY() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] shearingXZ() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] shearingY() (mechanica.MxMatrix3d static method), [1] (mechanica.MxMatrix3f static method), [1] shearingYZ() (mechanica.MxMatrix4d static method), [1] (mechanica.MxMatrix4f static method), [1] shifted (mechanica.MxPotential property), [1] show() (in module mechanica) (mechanica.MxSimulator static method), [1]

showDiscretization() (mechanica.MxSystem static method), [1] showingDiscretization() (mechanica.MxSystem static method), [1] sigma (mechanica.DPDPotential attribute), [1] Simulator (in module mechanica), [1] SolidCube (mechanica.PointsType attribute), [1] SolidSphere (mechanica.PointsType attribute), [1] spatial_size_units (mechanica.MxSpecies property), [1] Species (in module mechanica), [1] species (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.MxStateVector attribute), [1] (mechanica.ParticleType attribute), [1] species_type (mechanica.MxSpecies property), [1] SpeciesList (in module mechanica), [1] SpeciesValue (in module mechanica), [1] Sphere (mechanica.PointsType attribute), [1] sphericalPosition() (mechanica.MxParticleHandle method), [1] sphericalPositions() (mechanica.MxParticleList method), [1] (mechanica.MxParticleTypeList method), [1] split() (mechanica.MxClusterParticleHandle method), [1] (mechanica.MxParticleHandle method), [1] sq() (in module mechanica.lattice), [1] start() (in module mechanica) (mechanica.MxUniverse static method), [1] start_time (mechanica.MxParticleTimeEvent attribute), [1] (mechanica.MxTimeEventPy attribute), [1] StateVector (in module mechanica), [1] std (mechanica.Gaussian attribute), [1] step() (in module mechanica) (mechanica.MxUniverse static method), [1] stop() (in module mechanica) (mechanica.MxUniverse static method), [1] stringToLevel() (mechanica.MxLogger static method), [1] structure (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFVertexData property), [1] Structure3DF (in module mechanica), [1] Style (in module mechanica), [1] style (mechanica.MxAngleHandle property), [1] (mechanica.MxBondHandle property), [1] (mechanica.MxDihedralHandle property), [1] (mechanica.MxParticleHandle property), [1] (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1] subrenderer (mechanica.MxSystem attribute), [1] SubRendererFlags (class in mechanica), [1] substance_units (mechanica.MxSpecies property), [1] system (in module mechanica), [1] system_name (mechanica.version attribute) system_version (mechanica.version attribute)

T

target_energy (mechanica.MxParticleType attribute), [1] (mechanica.ParticleType attribute), [1] target_temperature (mechanica.MxParticleType property), [1] targetParticle (mechanica.MxParticleEvent attribute), [1] (mechanica.MxParticleTimeEvent attribute), [1] targetType (mechanica.MxParticleEvent attribute), [1] (mechanica.MxParticleTimeEvent attribute), [1] temperature (mechanica.MxParticleType property), [1] (mechanica.MxUniverse property), [1] time (mechanica.MxUniverse property), [1] TimeEvent (in module mechanica), [1] times_fired (mechanica.MxEventBase attribute), [1] to_cluster() (mechanica.MxParticleHandle method), [1] (mechanica.MxParticleType method), [1] toEuler() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] toFile() (mechanica.Mx3DFStructure method), [1] (mechanica.MxIO static method), [1] toFile3DF() (mechanica.MxIO static method), [1] toMatrix() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] top (mechanica.MxBoundaryConditions attribute), [1] toString() (mechanica.DPDPotential method), [1] (mechanica.MxAngle method), [1] (mechanica.MxBond method), [1] (mechanica.MxBoundaryConditions method), [1] (mechanica.MxDihedral method), [1] (mechanica.MxForce method), [1] (mechanica.MxIO static method), [1] (mechanica.MxParticle method), [1] (mechanica.MxParticleList method), [1] (mechanica.MxParticleType method), [1] (mechanica.MxParticleTypeList method), [1] (mechanica.MxPotential method), [1] (mechanica.MxSpecies method), [1] (mechanica.MxSpeciesList method), [1] (mechanica.MxStateVector method), [1] (mechanica.MxStyle method), [1]

transformPoint() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] transformVector() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] transformVectorNormalized() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] translate() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] translateTo() (mechanica.Mx3DFMeshData method), [1] (mechanica.Mx3DFStructure method), [1] translation() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] transposed() (mechanica.MxMatrix3d method), [1] (mechanica.MxMatrix3f method), [1] (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] type() (mechanica.MxParticleHandle method), [1] type_id (mechanica.MxParticleHandle property), [1] types (mechanica.ClusterType attribute), [1] (mechanica.MxClusterParticleType attribute), [1] types() (mechanica.MxBind static method), [1]

U

uniformScaling() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] uniformScalingSquared() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] unitcell (class in mechanica.lattice), [1]

units (mechanica.MxSpecies property), [1] Universe (in module mechanica), [1] unregister() (mechanica.models.center.cell_polarity._CellPolarity static method), [1] up() (mechanica.MxMatrix4d method), [1] (mechanica.MxMatrix4f method), [1] uptake() (mechanica.MxFluxes static method), [1]

V

vector() (mechanica.MxQuaterniond method), [1] (mechanica.MxQuaternionf method), [1] velocities (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] velocity (mechanica.MxBoundaryCondition attribute), [1] (mechanica.MxParticleHandle property), [1] version (class in mechanica) (mechanica.version attribute) Vertex3DFData (in module mechanica), [1]

vertices (mechanica.Mx3DFEdgeData property), [1] (mechanica.Mx3DFFaceData property), [1] (mechanica.Mx3DFMeshData property), [1] (mechanica.Mx3DFStructure property), [1] virial (mechanica.MxParticleList property), [1] (mechanica.MxParticleTypeList property), [1] virial() (mechanica.MxParticleHandle method), [1] (mechanica.MxUniverse static method), [1] visible (mechanica.MxStyle property), [1] vRadiusDef (mechanica.Mx3DFStructure property), [1]

W

w() (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1]

well() (mechanica.MxPotential static method), [1]

X

x() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] xAxis() (mechanica.MxVector2d static method), [1] (mechanica.MxVector2f static method), [1] (mechanica.MxVector2i static method), [1] (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1]

xScale() (mechanica.MxVector2d static method), [1] (mechanica.MxVector2f static method), [1] (mechanica.MxVector2i static method), [1] (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1] xy() (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] xyz() (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1]

Y

y() (mechanica.MxVector2d method), [1] (mechanica.MxVector2f method), [1] (mechanica.MxVector2i method), [1] (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1] yAxis() (mechanica.MxVector2d static method), [1] (mechanica.MxVector2f static method), [1] (mechanica.MxVector2i static method), [1] (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1]

yScale() (mechanica.MxVector2d static method), [1] (mechanica.MxVector2f static method), [1] (mechanica.MxVector2i static method), [1] (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1]

Z

z() (mechanica.MxVector3d method), [1] (mechanica.MxVector3f method), [1] (mechanica.MxVector3i method), [1] (mechanica.MxVector4d method), [1] (mechanica.MxVector4f method), [1] (mechanica.MxVector4i method), [1]

zAxis() (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1] zScale() (mechanica.MxVector3d static method), [1] (mechanica.MxVector3f static method), [1] (mechanica.MxVector3i static method), [1]